spatial-raw-processing
Load when converting spatial transcriptomics raw FASTQ pairs through ST-Pipeline into a `raw_counts.h5ad` ready for spatial-preprocess. Skip when input is already a count-matrix AnnData (go straight to spatial-preprocess) or for non-spatial bulk / scRNA FASTQ (use bulkrna-read-qc / sc-fastq-qc).
Details
- Path
- Skills/External_Collections/OmicsClaw/skills/spatial/spatial-raw-processing/SKILL.md
- License
- MIT
- Dependencies
- 4