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spatial-raw-processing

Load when converting spatial transcriptomics raw FASTQ pairs through ST-Pipeline into a `raw_counts.h5ad` ready for spatial-preprocess. Skip when input is already a count-matrix AnnData (go straight to spatial-preprocess) or for non-spatial bulk / scRNA FASTQ (use bulkrna-read-qc / sc-fastq-qc).

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Details

Path
Skills/External_Collections/OmicsClaw/skills/spatial/spatial-raw-processing/SKILL.md
License
MIT
Dependencies
4

FAQ