pyopenms
Complete mass spectrometry analysis platform. Use for proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free and isobaric quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.
Details
- Path
- skills/pyopenms
- License
- 3 clause BSD license
- Allowed tools
- 1
- Bundled scripts
- 16
- Dependencies
- 3
Allowed tools
Read Write Edit Bash
Bundled scripts
- skills/pyopenms/scripts/align_link_quantify.py
- skills/pyopenms/scripts/export_gnps_sirius.py
- skills/pyopenms/scripts/theoretical_spectrum.py
- skills/pyopenms/scripts/inspect_ms_data.py
- skills/pyopenms/scripts/process_identifications.py
- skills/pyopenms/scripts/mass_calculator.py
- skills/pyopenms/scripts/detect_features_centroided.py
- skills/pyopenms/scripts/plot_ms_data.py
- skills/pyopenms/scripts/detect_features_metabo.py
- skills/pyopenms/scripts/consensus_to_matrix.py
- skills/pyopenms/scripts/accurate_mass_search.py
- skills/pyopenms/scripts/process_spectra.py
- skills/pyopenms/scripts/detect_adducts.py
- skills/pyopenms/scripts/convert_format.py
- skills/pyopenms/scripts/digest_protein.py
- skills/pyopenms/scripts/extract_chromatograms.py