neuropixels-analysis
Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.
Details
- Path
- skills/neuropixels-analysis
- License
- MIT license
- Bundled scripts
- 7
- Dependencies
- 3
Bundled scripts
- skills/neuropixels-analysis/scripts/preprocess_recording.py
- skills/neuropixels-analysis/scripts/compute_metrics.py
- skills/neuropixels-analysis/scripts/run_sorting.py
- skills/neuropixels-analysis/scripts/neuropixels_pipeline.py
- skills/neuropixels-analysis/scripts/explore_recording.py
- skills/neuropixels-analysis/scripts/export_to_phy.py
- skills/neuropixels-analysis/assets/analysis_template.py