gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
Details
- Path
- skills/gget
- License
- BSD-2-Clause license
- Allowed tools
- 4
- Bundled scripts
- 3
- Dependencies
- 3
Allowed tools
ReadWriteEditBash
Bundled scripts
- skills/gget/scripts/batch_sequence_analysis.py
- skills/gget/scripts/gene_analysis.py
- skills/gget/scripts/enrichment_pipeline.py