deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
Details
- Path
- skills/deeptools
- License
- BSD license
- Allowed tools
- 4
- Bundled scripts
- 2
- Dependencies
- 3
Allowed tools
ReadWriteEditBash
Bundled scripts
- skills/deeptools/scripts/validate_files.py
- skills/deeptools/scripts/workflow_generator.py