rna-seq-analysis

Bulk RNA-seq analysis pipeline covering alignment (STAR), quantification (Salmon, featureCounts), and differential expression (DESeq2). Triggers on RNA-seq, STAR, Salmon, DESeq2, differential expression, gene expression, tximport, featureCounts, transcriptomics, "bulk RNA-seq", "STAR alignment", "Salmon quantification", "gene counts", "DESeq2 results", "shrinkage estimator", "volcano plot RNA-seq".